data_bmse012582 ####################### # Entry information # ####################### save_entry_information_1 _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information_1 _Entry.ID bmse012582 _Entry.Title N-[[(2R)-oxolan-2-yl]methyl]methanesulfonamide _Entry.Type 'metabolite/natural product' _Entry.Version_type original _Entry.Submission_date 2023-04-05 _Entry.Accession_date 2023-04-05 _Entry.Last_release_date 2023-08-11 _Entry.Original_release_date 2023-08-11 _Entry.Origination author _Entry.NMR_STAR_version 3.2.10.4 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.DOI 10.12018/bmse012582 loop_ _Entry_experimental_methods.ID _Entry_experimental_methods.Method _Entry_experimental_methods.Subtype _Entry_experimental_methods.Entry_ID 1 NMR solution bmse012582 stop_ loop_ _Entry_author.Ordinal _Entry_author.Given_name _Entry_author.Family_name _Entry_author.First_initial _Entry_author.Entry_ID 1 Sridhar Sreeramulu S. bmse012582 2 Christian Richter C. bmse012582 3 Harald Schwalbe H. bmse012582 4 Hannes Berg . bmse012582 stop_ loop_ _Entry_src.ID _Entry_src.Project_name _Entry_src.Entry_ID 1 EUOS bmse012582 stop_ loop_ _Release.Release_number _Release.Format_type _Release.Format_version _Release.Date _Release.Type _Release.Author _Release.Entry_ID 1 NMR-STAR 3.2.1.18 2023-11-09 original author bmse012582 stop_ loop_ _Auxiliary_files.ID _Auxiliary_files.Name _Auxiliary_files.Format _Auxiliary_files.URI _Auxiliary_files.Details _Auxiliary_files.Entry_ID 1 bmse012582.mol sdf na 'Structure Definition File' bmse012582 stop_ save_ ############### # Citations # ############### save_citations_1 _Citation.Sf_category citations _Citation.Sf_framecode citations_1 _Citation.Entry_ID bmse012582 _Citation.ID 1 _Citation.PubMed_ID 32533387 _Citation.DOI 10.1007/s10858-020-00327-9 _Citation.Title 'NMR quality control of fragment libraries for screening.' _Citation.Status published _Citation.Type journal _Citation.Journal_abbrev 'J Biomol NMR' _Citation.Journal_name_full 'Journal of biomolecular NMR' _Citation.Journal_volume 74 _Citation.Journal_issue 10-11 _Citation.Journal_ISSN 1573-5001 _Citation.Page_first 555 _Citation.Page_last 563 _Citation.Year 2020 loop_ _Citation_author.Ordinal _Citation_author.Given_name _Citation_author.Family_name _Citation_author.First_initial _Citation_author.Entry_ID _Citation_author.Citation_ID 1 Sridhar Sreeramulu S. bmse012582 1 2 Christian Richter C. bmse012582 1 3 Till Kuehn T. bmse012582 1 4 Kamal Azzaoui K. bmse012582 1 5 'Marcel Jules Jose' Blommers . bmse012582 1 6 Rebecca 'Del Conte' R. bmse012582 1 7 Marco Fragai M. bmse012582 1 8 Nils Trieloff N. bmse012582 1 9 Peter Schmieder P. bmse012582 1 10 Marc Nazare M. bmse012582 1 11 Edgar Specker E. bmse012582 1 12 Vladimir Ivanov V. bmse012582 1 13 Hartmut Oschkinat H. bmse012582 1 14 Lucia Banci L. bmse012582 1 15 Harald Schwalbe H. bmse012582 1 stop_ save_ ############################################# # Molecular system (assembly) description # ############################################# save_assembly_1 _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly_1 _Assembly.Entry_ID bmse012582 _Assembly.ID 1 _Assembly.Name N-[[(2R)-oxolan-2-yl]methyl]methanesulfonamide _Assembly.Number_of_components 1 _Assembly.Thiol_state 'not present' loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 chem_comp_1 1 yes native no no bmse012582 1 stop_ loop_ _Atom.Assembly_atom_ID _Atom.Entity_assembly_ID _Atom.Entity_ID _Atom.Comp_index_ID _Atom.Seq_ID _Atom.Atom_ID _Atom.Type_symbol _Atom.Entry_ID _Atom.Assembly_ID 1 1 1 1 1 C1 C bmse012582 1 2 1 1 1 1 C2 C bmse012582 1 3 1 1 1 1 C3 C bmse012582 1 4 1 1 1 1 C4 C bmse012582 1 5 1 1 1 1 C5 C bmse012582 1 6 1 1 1 1 C6 C bmse012582 1 7 1 1 1 1 N7 N bmse012582 1 8 1 1 1 1 O8 O bmse012582 1 9 1 1 1 1 O9 O bmse012582 1 10 1 1 1 1 O10 O bmse012582 1 11 1 1 1 1 S11 S bmse012582 1 stop_ save_ #################################### # Biological polymers and ligands # #################################### save_entity_1 _Entity.Sf_category entity _Entity.Sf_framecode entity_1 _Entity.Entry_ID bmse012582 _Entity.ID 1 _Entity.Name N-[[(2R)-oxolan-2-yl]methyl]methanesulfonamide _Entity.Type non-polymer _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_linkage no _Entity.Nonpolymer_comp_label chem_comp_1 _Entity.Number_of_monomers 1 _Entity.Number_of_nonpolymer_components 1 _Entity.Thiol_state 'not present' _Entity.Formula_weight 179.23732 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 1 chem_comp_1 bmse012582 1 stop_ save_ ################################# # Polymer residues and ligands # ################################# save_chem_comp_1 _Chem_comp.Sf_category chem_comp _Chem_comp.Sf_framecode chem_comp_1 _Chem_comp.Entry_ID bmse012582 _Chem_comp.Name N-[[(2R)-oxolan-2-yl]methyl]methanesulfonamide _Chem_comp.Number_atoms_all 11 _Chem_comp.InChI_code InChI=1S/C6H13NO3S/c1-11(8,9)7-5-6-3-2-4-10-6/h6-7H,2-5H2,1H3/t6-/m1/s1 _Chem_comp.Formal_charge 0 _Chem_comp.Aromatic no _Chem_comp.Formula C6H13NO3S _Chem_comp.Formula_weight 179.23732 _Chem_comp.Formula_mono_iso_wt_nat 179.061614281 _Chem_comp.Formula_mono_iso_wt_13C 185.08174330900002 _Chem_comp.Formula_mono_iso_wt_15N 180.058649174 _Chem_comp.Formula_mono_iso_wt_13C_15N 186.07877820200002 _Chem_comp.Image_file_name bmse012582.png _Chem_comp.Image_file_format png _Chem_comp.Struct_file_name bmse012582.sdf _Chem_comp.Struct_file_format sdf loop_ _Chem_comp_descriptor.Descriptor _Chem_comp_descriptor.Type _Chem_comp_descriptor.Program _Chem_comp_descriptor.Program_version _Chem_comp_descriptor.Entry_ID CS(=O)(=O)NC[C@H]1CCCO1 SMILES_CANONICAL RDKit 2022.03.5 bmse012582 CS(=O)(=O)NC[C@H]1CCCO1 SMILES_ISOMERIC RDKit 2022.03.5 bmse012582 CS(=O)(=O)NC[C@H]1CCCO1 SMILES RDKit 2022.03.5 bmse012582 CS(=O)(=O)NC[C@H]1CCCO1 SMILES_CANONICAL OpenBabel 3.1.0 bmse012582 CS(=O)(=O)NC[C@H]1CCCO1 SMILES OpenBabel 3.1.0 bmse012582 InChI=1S/C6H13NO3S/c1-11(8,9)7-5-6-3-2-4-10-6/h6-7H,2-5H2,1H3/t6-/m1/s1 InChI OpenBabel 3.1.0 bmse012582 STPKQVRNXGFCBB-ZCFIWIBFSA-N InChI_KEY OpenBabel 3.1.0 bmse012582 InChI=1S/C6H13NO3S/c1-11(8,9)7-5-6-3-2-4-10-6/h6-7H,2-5H2,1H3/t6-/m1/s1 InChI ALATIS na bmse012582 stop_ loop_ _Chem_comp_identifier.Identifier _Chem_comp_identifier.Type _Chem_comp_identifier.Program _Chem_comp_identifier.Program_version _Chem_comp_identifier.Entry_ID b'N-[[(2R)-oxolan-2-yl]methyl]methanesulfonamide' 'IUPAC NAME' http://cactus.nci.nih.gov/chemical/structure na bmse012582 stop_ loop_ _Chem_comp_atom.Atom_ID _Chem_comp_atom.Type_symbol _Chem_comp_atom.Stereo_config _Chem_comp_atom.Charge _Chem_comp_atom.Aromatic_flag _Chem_comp_atom.PDBX_ordinal _Chem_comp_atom.Entry_ID C1 C N 0 no 1 bmse012582 C2 C N 0 no 2 bmse012582 C3 C N 0 no 3 bmse012582 C4 C N 0 no 4 bmse012582 C5 C N 0 no 5 bmse012582 C6 C R 0 no 6 bmse012582 N7 N N 0 no 7 bmse012582 O8 O N 0 no 8 bmse012582 O9 O N 0 no 9 bmse012582 O10 O N 0 no 10 bmse012582 S11 S N 0 no 11 bmse012582 stop_ loop_ _Atom_nomenclature.Atom_ID _Atom_nomenclature.Atom_name _Atom_nomenclature.Naming_system _Atom_nomenclature.Entry_ID C7 C1 ALATIS bmse012582 C11 C2 ALATIS bmse012582 C10 C3 ALATIS bmse012582 C9 C4 ALATIS bmse012582 C5 C5 ALATIS bmse012582 C8 C6 ALATIS bmse012582 N2 N7 ALATIS bmse012582 O3 O8 ALATIS bmse012582 O4 O9 ALATIS bmse012582 O6 O10 ALATIS bmse012582 S1 S11 ALATIS bmse012582 stop_ loop_ _Chem_comp_bond.ID _Chem_comp_bond.Type _Chem_comp_bond.Value_order _Chem_comp_bond.Atom_ID_1 _Chem_comp_bond.Atom_ID_2 _Chem_comp_bond.Aromatic_flag _Chem_comp_bond.Stereo_config _Chem_comp_bond.Ordinal _Chem_comp_bond.Entry_ID 1 covalent SING C3 C2 no N 1 bmse012582 2 covalent SING C4 C2 no N 2 bmse012582 3 covalent SING C6 C3 no N 3 bmse012582 4 covalent SING C6 C5 no N 4 bmse012582 5 covalent SING N7 C5 no N 5 bmse012582 6 covalent SING O10 C4 no N 6 bmse012582 7 covalent SING O10 C6 no N 7 bmse012582 8 covalent SING S11 C1 no N 8 bmse012582 9 covalent SING S11 N7 no N 9 bmse012582 10 covalent DOUB S11 O8 no N 10 bmse012582 11 covalent DOUB S11 O9 no N 11 bmse012582 stop_ loop_ _Chem_comp_db_link.Database_code _Chem_comp_db_link.Accession_code _Chem_comp_db_link.Accession_code_type _Chem_comp_db_link.Entry_ID EU-OPENSCREEN EOS103388 'compound ID' bmse012582 stop_ save_ ##################################### # Sample contents and methodology # ##################################### ######################## # Sample description # ######################## save_sample_1 _Sample.Sf_category sample _Sample.Sf_framecode sample_1 _Sample.Entry_ID bmse012582 _Sample.ID 1 _Sample.Name 'sample 1' _Sample.Type solution _Sample.Aggregate_sample_number 1 loop_ _Sample_component.ID _Sample_component.Mol_common_name _Sample_component.Isotopic_labeling _Sample_component.Assembly_ID _Sample_component.Assembly_label _Sample_component.Entity_ID _Sample_component.Entity_label _Sample_component.Type _Sample_component.Concentration_val _Sample_component.Concentration_val_units _Sample_component.Entry_ID _Sample_component.Sample_ID 1 N-[[(2R)-oxolan-2-yl]methyl]methanesulfonamide 'natural abundance' 1 $assembly_1 1 $entity_1 solute 2 mM bmse012582 1 2 'Sodium phosphate' 'natural abundance' . . . . buffer 25 mM bmse012582 1 3 'Sodium chloride' 'natural abundance' . . . . salt 150 mM bmse012582 1 4 DSS 'natural abundance' . . . . reference 10 uM bmse012582 1 5 H2O 'natural abundance' . . . . solvent 95 % bmse012582 1 6 DMSO '[2H U-100%]' . . . . solvent 5 % bmse012582 1 stop_ save_ ####################### # Sample conditions # ####################### save_sample_conditions_1 _Sample_condition_list.Sf_category sample_conditions _Sample_condition_list.Sf_framecode sample_conditions_1 _Sample_condition_list.Entry_ID bmse012582 _Sample_condition_list.ID 1 _Sample_condition_list.Name 'sample conditions 1' loop_ _Sample_condition_variable.Type _Sample_condition_variable.Val _Sample_condition_variable.Val_err _Sample_condition_variable.Val_units _Sample_condition_variable.Entry_ID _Sample_condition_variable.Sample_condition_list_ID pH 7.5 . pH bmse012582 1 pressure 1 . atm bmse012582 1 temperature 298 0.1 K bmse012582 1 stop_ save_ ############################ # Computer software used # ############################ save_software_1 _Software.Sf_category software _Software.Sf_framecode software_1 _Software.Entry_ID bmse012582 _Software.ID 1 _Software.Name TopSpin _Software.Version 4.0.3 loop_ _Vendor.Name _Vendor.Electronic_address _Vendor.Entry_ID _Vendor.Software_ID 'Bruker Biospin' http://www.bruker.com/products/mr/nmr/nmr-software/software/topspin/ bmse012582 1 stop_ loop_ _Task.Task _Task.Entry_ID _Task.Software_ID 'data analysis' bmse012582 1 'peak picking' bmse012582 1 processing bmse012582 1 stop_ save_ ######################### # Experimental detail # ######################### ################################## # NMR Spectrometer definitions # ################################## save_NMR_spectrometer_1 _NMR_spectrometer.Sf_category NMR_spectrometer _NMR_spectrometer.Sf_framecode NMR_spectrometer_1 _NMR_spectrometer.Entry_ID bmse012582 _NMR_spectrometer.ID 1 _NMR_spectrometer.Name 'spectrometer Bruker' _NMR_spectrometer.Manufacturer Bruker _NMR_spectrometer.Model Avance _NMR_spectrometer.Field_strength 600 save_ ############################# # NMR applied experiments # ############################# save_experiment_list_1 _Experiment_list.Sf_category experiment_list _Experiment_list.Sf_framecode experiment_list_1 _Experiment_list.Entry_ID bmse012582 _Experiment_list.ID 1 loop_ _Experiment.ID _Experiment.Name _Experiment.Raw_data_flag _Experiment.Sample_ID _Experiment.Sample_label _Experiment.Sample_state _Experiment.Sample_condition_list_ID _Experiment.Sample_condition_list_label _Experiment.NMR_spectrometer_ID _Experiment.NMR_spectrometer_label _Experiment.Entry_ID _Experiment.Experiment_list_ID 1 '1D 1H' yes 1 $sample_1 isotropic 1 $sample_conditions_1 1 $NMR_spectrometer_1 bmse012582 1 stop_ loop_ _Experiment_file.Experiment_ID _Experiment_file.Name _Experiment_file.Type _Experiment_file.Content _Experiment_file.Directory_path _Experiment_file.Entry_ID _Experiment_file.Experiment_list_ID 1 1 text/directory 'NMR experiment directory' nmr/set01/ bmse012582 1 1 cmcproject.xml text/xml 'spectrum analysis' nmr/set01/1/pdata/1/ bmse012582 1 1 multiplet.txt text 'Peak list' nmr/set01/1/pdata/1/ bmse012582 1 1 spectrum_overview.pdf pdf 'Spectrum image' nmr/set01/1/pdata/1/ bmse012582 1 1 spectrum_overview.png image/png 'Spectral image' nmr/set01/1/pdata/1/ bmse012582 1 stop_ save_ #################### # NMR parameters # #################### ############################## # Assigned chemical shifts # ############################## ################################ # Chemical shift referencing # ################################ save_chem_shift_reference_1 _Chem_shift_reference.Sf_category chem_shift_reference _Chem_shift_reference.Sf_framecode chem_shift_reference_1 _Chem_shift_reference.Entry_ID bmse012582 _Chem_shift_reference.ID 1 _Chem_shift_reference.Name 'chem shift ref set' loop_ _Chem_shift_ref.Atom_type _Chem_shift_ref.Atom_isotope_number _Chem_shift_ref.Mol_common_name _Chem_shift_ref.Atom_group _Chem_shift_ref.Chem_shift_units _Chem_shift_ref.Chem_shift_val _Chem_shift_ref.Ref_method _Chem_shift_ref.Ref_type _Chem_shift_ref.Indirect_shift_ratio _Chem_shift_ref.Entry_ID _Chem_shift_ref.Chem_shift_reference_ID H 1 DSS 'methyl protons' ppm 0.0 internal direct 1.0 bmse012582 1 stop_ save_ ######################### # Spectral peak lists # ######################### save_spectral_peak_list_1 _Spectral_peak_list.Sf_category spectral_peak_list _Spectral_peak_list.Sf_framecode spectral_peak_list_1 _Spectral_peak_list.Entry_ID bmse012582 _Spectral_peak_list.ID 1 _Spectral_peak_list.Name 'spectral peaks 1D 1H' _Spectral_peak_list.Sample_ID 1 _Spectral_peak_list.Sample_label $sample_1 _Spectral_peak_list.Sample_condition_list_ID 1 _Spectral_peak_list.Sample_condition_list_label $sample_conditions_1 _Spectral_peak_list.Chem_shift_reference_ID 1 _Spectral_peak_list.Experiment_ID 1 _Spectral_peak_list.Experiment_name '1D 1H' _Spectral_peak_list.Number_of_spectral_dimensions 1 _Spectral_peak_list.Assigned_chem_shift_list_ID 1 _Spectral_peak_list.Details 'F1: 1H' loop_ _Spectral_dim.ID _Spectral_dim.Spectrometer_frequency _Spectral_dim.Atom_type _Spectral_dim.Atom_isotope_number _Spectral_dim.Spectral_region _Spectral_dim.Sweep_width _Spectral_dim.Sweep_width_units _Spectral_dim.Entry_ID _Spectral_dim.Spectral_peak_list_ID 1 600.1728185 H 1 'Full H' 12.0157698570257 ppm bmse012582 1 stop_ loop_ _Spectral_peak_software.Software_ID _Spectral_peak_software.Software_label _Spectral_peak_software.Entry_ID _Spectral_peak_software.Spectral_peak_list_ID 1 $software_1 bmse012582 1 stop_ loop_ _Peak.ID _Peak.Entry_ID _Peak.Spectral_peak_list_ID 1 bmse012582 1 2 bmse012582 1 3 bmse012582 1 4 bmse012582 1 5 bmse012582 1 6 bmse012582 1 7 bmse012582 1 8 bmse012582 1 9 bmse012582 1 stop_ loop_ _Peak_char.Peak_ID _Peak_char.Spectral_dim_ID _Peak_char.Chem_shift_val _Peak_char.Details _Peak_char.Entry_ID _Peak_char.Spectral_peak_list_ID 1 1 3.7440 10_m bmse012582 1 2 1 3.1282 6_dd bmse012582 1 3 1 3.6697 10_m_Q3 bmse012582 1 4 1 4.6613 SUP bmse012582 1 5 1 2.5703 DMSO bmse012582 1 6 1 1.8671 9,11_m_Q2 bmse012582 1 7 1 0.0364 TMS bmse012582 1 8 1 1.5457 9_m_Q1 bmse012582 1 9 1 2.9718 5,6,7_m bmse012582 1 stop_ loop_ _Spectral_transition.ID _Spectral_transition.Entry_ID _Spectral_transition.Spectral_peak_list_ID 1 bmse012582 1 2 bmse012582 1 3 bmse012582 1 4 bmse012582 1 5 bmse012582 1 6 bmse012582 1 7 bmse012582 1 8 bmse012582 1 9 bmse012582 1 10 bmse012582 1 11 bmse012582 1 12 bmse012582 1 13 bmse012582 1 14 bmse012582 1 15 bmse012582 1 16 bmse012582 1 17 bmse012582 1 18 bmse012582 1 19 bmse012582 1 20 bmse012582 1 21 bmse012582 1 22 bmse012582 1 23 bmse012582 1 24 bmse012582 1 25 bmse012582 1 26 bmse012582 1 27 bmse012582 1 28 bmse012582 1 29 bmse012582 1 30 bmse012582 1 31 bmse012582 1 32 bmse012582 1 33 bmse012582 1 34 bmse012582 1 35 bmse012582 1 36 bmse012582 1 stop_ loop_ _Spectral_transition_char.Spectral_transition_ID _Spectral_transition_char.Spectral_dim_ID _Spectral_transition_char.Chem_shift_val _Spectral_transition_char.Entry_ID _Spectral_transition_char.Spectral_peak_list_ID 1 1 3.7623 bmse012582 1 2 1 3.7509 bmse012582 1 3 1 3.7488 bmse012582 1 4 1 3.7371 bmse012582 1 5 1 3.7256 bmse012582 1 6 1 3.1429 bmse012582 1 7 1 3.1360 bmse012582 1 8 1 3.1204 bmse012582 1 9 1 3.1135 bmse012582 1 10 1 3.6879 bmse012582 1 11 1 3.6775 bmse012582 1 12 1 3.6752 bmse012582 1 13 1 3.6650 bmse012582 1 14 1 3.6616 bmse012582 1 15 1 3.6514 bmse012582 1 16 1 4.6613 bmse012582 1 17 1 2.5639 bmse012582 1 18 1 2.5673 bmse012582 1 19 1 2.5704 bmse012582 1 20 1 2.5735 bmse012582 1 21 1 2.5767 bmse012582 1 22 1 1.9832 bmse012582 1 23 1 1.7511 bmse012582 1 24 1 0.0364 bmse012582 1 25 1 1.5749 bmse012582 1 26 1 1.5630 bmse012582 1 27 1 1.5538 bmse012582 1 28 1 1.5513 bmse012582 1 29 1 1.5490 bmse012582 1 30 1 1.5421 bmse012582 1 31 1 1.5373 bmse012582 1 32 1 1.5305 bmse012582 1 33 1 1.5282 bmse012582 1 34 1 1.5165 bmse012582 1 35 1 3.0471 bmse012582 1 36 1 2.8964 bmse012582 1 stop_ loop_ _Peak_coupling.ID _Peak_coupling.Peak_ID _Peak_coupling.Spectral_dim_ID _Peak_coupling.Coupling_val _Peak_coupling.Entry_ID _Peak_coupling.Spectral_peak_list_ID 1 1 1 5.5032 bmse012582 1 2 2 1 13.5078 bmse012582 1 3 3 1 4.3775 bmse012582 1 4 4 1 0.0000 bmse012582 1 5 5 1 1.9073 bmse012582 1 6 6 1 139.2340 bmse012582 1 7 7 1 0.0000 bmse012582 1 8 8 1 3.8911 bmse012582 1 9 9 1 90.4122 bmse012582 1 stop_ save_